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2/27/08

Hair Loss-New approach by Genetic Engineering


Throughout history man has searched for the cause of hair loss. It is only in recent years, with greater knowledge of genetics and the chemistry of sexual hormones, that we have begun to understand the causes. One thing that we do know for certain: no matter what we eat, what our lifestyles may be, or what kind of vitamins we take, we never grow more hair follicles than we were born with.

Predominant type

The most common type of baldness is called Male Pattern Baldness or more scientifically, Androgenetic Alopecia. In Androgenetic Alopecia, hair follicles that are producing healthy, terminal hairs begin to produce thinner, shorter, more brittle hairs with weaker shafts (this process is called Miniaturization and the hairs involved are called Miniaturized hairs). Eventually, these follicles produce only fine, almost invisible, short, vellus hairs, or they may die out altogether.
Finding the Genes
Common baldness cannot occur without the presence of specific inherited genes. These genes can be passed on by either parent. A gene is a single bit of chemically encoded hereditary instruction that is located on a chromosome and actually represents a tiny segment of DNA.
Chromosomes occur in pairs (humans have 23 pairs), and every individual gets one set of chromosomes from each parent. The genetics of androgenetic alopecia is complicated and hair loss is now felt to involve more than one gene. When several genes govern a trait, it is called polygenic. Genes that are located on the X or Y-chromosomes are call sex-linked.
Genes on the other 22 pairs of chromosomes are called autosomal. It is felt that the genes governing common baldness are autosomal. This means that the baldness trait can be inherited from the mother's side of the family or the father's side. The commonly held notion that baldness comes only from the mother's side of the family is incorrect, although for reasons not fully understood, the predisposition inherited from an affected mother is of slightly greater importance than that inherited from an affected father.
The genes involved in androgenetic alopecia are felt to be dominant. Just because a person has the genes for baldness, doesn't mean the trait will manifest itself. The ability of a gene to affect one's characteristics, i.e. be visible in a particular individual, is called "expressivity".
Studying the Factors
Gene expression is related to a number of factors, the major ones being hormones and age, although stress and other factors can play a role. To put it simply, a man whose father and uncles are severely bald may have minimal hair loss himself, either because the baldness genes have not been passed on or because the expression of the baldness gene that he did inherit is limited. It is of interest that, to date, none of the genes for male pattern baldness have been identified.So lot opportunities are there in this field that result in genetic engineering to prevent common baldness.

INSULIN

Insulin is a hormone produced by beta cells in the pancreas. It has three important functions

1.Allow glucose to pass into cells, where it is used for energy.


2. Suppress excess production of sugar in the liver and muscles.


3.Suppress breakdown of fat for energy.


In the absence of insulin, blood sugar levels rise because muscle and fat cells aren't able to utilize glucose for energy. They signal the body that they're "hungry." The liver then releases glycogen, a form of stored glucose. This further increases the blood sugar level. When the blood sugar level reaches about 180 mg/dl, glucose begins to spill into the urine. Large amounts of water are needed to dissolve the excess sugar, resulting in excessive thirst and urination. This condition is called Diabetes mellitus



Without glucose for energy, the body begins to metabolize protein and fat. Fat metabolism results in the production of ketones in the liver. Ketones are excreted in the urine along with sodium bicarbonate, which results in a decrease in the pH of the blood. This condition is called acidosis. To correct the acidosis, the body begins a deep, labored respiration, called Kussmaul's respiration. Left unchecked, a person in this situation will fall into a coma and die.



Production of Insulin in the Body
The creation of insulin in the beta cells of the pancreas is a two step procedure. Beta cells first produce preproinsulin. Preproinsulin is cleaved to create proinsulin, which is further cleaved to produce equal amounts of insulin and C-peptide. Endogenous (self-produced) insulin has a half-life of about four minutes in the bloodstream. C-peptide lasts about 30 minutes. By measuring the amount of C-peptide in the blood, scientists can determine the amount of insulin produced by the pancreas.
In people who do not have diabetes, the pancreas stores about 200 units of insulin. The average basal rate for adults is one to two units per hour. After meals, insulin secretion increases to four-to-six units per hour.



Reason behind injecting insulin to Diabetes patients
Insulin must be injected because it is a protein. If it were taken orally, the body's digestive system would break it down, rendering it useless.



Storing of insulin
Unopened insulin vials should be kept cool. Storing them in the refrigerator will help them last as long as possible. Never freeze insulin, however, as freezing can destroy it. Open insulin, whether vials or pens, can be kept at room temperature for about a month.



Manufacturing of insulin
Insulin used by people with diabetes can come from three sources: human (created via recombinant DNA methods), pork, or beef. Beef insulin has been discontinued, and essentially all people who are newly diagnosed are placed on human insulin.


Click Here to Know about its Structure Function relationship

MAJOR BIOTECH BASED RESEARCH INSTITUTES IN INDIA

Agharkar Research Institute (DST)
Gopal Ganesh Agarkar Road,
Pune 411 004,
Maharashtra
Telephone: 020-25654357/ 3680
Fax: 020-25651542
Web:
http://www.aripune.org/
Research Area: Animal sciences, microbial sciences, plant sciences.
Degrees Awarded: M.Sc., Ph.D.

Bhabha Atomic Research Centre (DAE)
Trombay,
Mumbai 400 085,
Maharashtra
Telephone: 022-25505050/5010
Fax: 022-25505151/25519613
Web:
http://www.barc.ernet.in/
Research Area: The entire spectrum of nuclear science and engineering: from particle physics, nuclear engineering, isotope technology, radiation medicine, solid state physics, chemical and life sciences, nuclear agriculture, computers, robotics and information technology.
Degrees Awarded: Ph.D

Bose Institute (DST)
93/1, Acharya Prafulla Chandra Road,
Kolkata 700 009,
West Bengal
Telephone: 033-23502402/2403/6619/6702
Fax: 033-23506790
Web:
http://www.boseinst.ernet.in/
Research Area: Bioinformatics & computational biology, structure and functional dynamics of biomolecules, drug modelling, molecular genetics of microbes, development of transgenic plants, etc.
Degrees Awarded: Ph.D


Central Drug Research Institute (CSIR)
Chattar Manzil Palace,
Post Box No. 173,
Lucknow 226 001,
Uttar Pradesh
Telephone: 0522-2212411-18, 2223286, 2210932
Fax: 0522-2223405, 2223938/9504
Web:
http://www.cdriindia.org/
Research Area: Reproductive health research, CNS/ CVS & other disorders, filariasis, malaria, natural products, microbial infections, leishmaniasis, technology development, new approaches in drug discovery & design, biological screening, clinical trials & pharmacokinetic studies, preclinical safety evaluation and regulatory toxicity.
Degrees Awarded: Ph.D.


Central Food Technological Research Institute (CSIR)
Mysore 570 020,
Karnataka
Telephone: 0821-2515910/ 2514760
Fax: 0821-2517233
Email: prp /at/ cscftri.ren.nic.in
Web:
http://www.cftri.com/
Research Area: Biochemistry and nutrition, fermentation technologies and bioengineering, flour milling, baking & confectionery technologies, food engineering, food microbiology, food packaging technology, food protectants & infestation control, food safety & analytical quality control laboratories, fruit & vegetable technology, grain science & technology, lipid science & traditional foods, meat, fish & poultry technology, plant cell biotechnology, plantation products, spices & flavour technology, protein chemistry & technology, sensory science.
Degrees Awarded: M.Sc. (Food technology), M.Sc. (Food Science) by Research, Ph.D.


Central Institute of Medicinal and Aromatic Plants (CSIR)
P.O. CIMAP,
Near Kukrail Picnic Spot,
Lucknow 226 015,
Uttar Pradesh Telephone: 0522-2359623
Fax: 0522-2342666
Web:
http://www.cimap.res.in/
Research Area: Development of agro-technologies for economically important medicinal and aromatic plants, basic research in the areas of genetic resources, biotechnology, cytogenetics, phytochemistry, plant physiology, biochemistry, plant protection, pharmacognosy and molecular biology.
Degrees Awarded: Ph.D.

Central Leather Research Institute (CSIR)
Adyar,
Chennai 600 020,
Tamil Nadu
Telephone: 044-24910846/97
Fax: 044-24912150
Web:
http://www.clri.org/
Research Area: Basic and applied research in leather and allied sciences. Fundamental research areas include biotechnology, biomaterials, bacteriology, bio-products, polymer science & technology, chemistry, biophysics, environmental & chemical engineering, NMR, etc.
Degrees Awarded: B.Tech., M.Tech., Ph.D.

Centre for Cellular & Molecular Biology (CSIR)
Uppal Road,
Hyderabad 500 007,
Andhra Pradesh
Telephone: 040-27160222-41
Fax: 040-27160591/ 0311
Web:
http://www.ccmb.res.in/
Research Area: Biochemistry & biophysics, bioinformatics, biomedicines & biotechnology, cell biology and development, genetics & evolution, genomics, molecular biology.
Degrees Awarded: Ph.D.


Centre for DNA Fingerprinting and Diagnostics (DBT)
Nacharam,
Hyderabad 500 076,
Andhra Pradesh
Telephone: 040-27151344
Fax: 040-27155610
Web:
http://www.cdfd.org.in/
Research Area: Automated genome analysis, bacterial genetics, cancer biology, cell biology & gene expression, computational biology & bioinformatics, computational & functional genomics, immunology, mammalian genetics, molecular genetics, molecular oncology, molecular virology, structural biology, transcription.
Degrees Awarded: Ph.D.


Indian Institute of Chemical Biology (CSIR)
4, Raja S.C. Mullick Road,
Jadavpur,
Kolkata 700 032,
West Bengal
Telephone: 033-24730492/3492
Fax: 033-24730286
Web:
http://www.iicb.res.in/
Research Area: Cellular physiology, biotechnology, human genetics & genomics, drug design & mathematical modelling, infectious disease, immunology, synthetic & bioproduct chemistry.
Degrees Awarded: Ph.D.

Indian Institute of Chemical Technology (CSIR)
Uppal Road,
Hyderabad 500 007,
Andhra Pradesh
Telephone: 040-27193030/3234
Fax: 040-27160386/27193626
Web:
http://www.iictindia.org/
Research Area: Agrochemicals, fluoro-organics, gas based & fine chemicals, oils/fats derivatives, biology, industrial organics & intermediates, inorganics & materials, natural product based speciality chemicals, synthetic drugs and pharmaceuticals, surface coatings & polymers, catalysis, engineering sciences, coal & gas based technologies and pharmacology & toxicology.
Degrees Awarded: Ph.D


Indian Institute of Science
Bangalore 560 012,
Karnataka
Telephone: 080-22932001-03
Fax: 080-23600683/085
Web:
http://www.iisc.ernet.in/
Research Area:biochemistry, microbiology & cell biology, ecological sciences, molecular biophysics.
Degrees Awarded: M.Sc,Ph.D

Indian Institute of Technology Bombay
Powai,
Mumbai 400 076,
Maharashtra
Telephone: 022-25722545
Fax: 022-25723480
Web:
http://www.iitb.ac.in/
Research Area: Biotechnology, bioinformatics, molecularbiology,
Degrees Awarded: M.Sc., B.Tech, Ph.D.


Indian Institute of Technology Delhi
Hauz Khas,
New Delhi 110 016
Telephone: 011-26582222/1696
Fax: 011-26582037/2277
Web:
http://www.iitd.ac.in/
Research Area: Biochemical engineering & biotechnology,
Degrees Awarded: M.S, B.Tech, Ph.D.

Indian Institute of Technology Guwahati
North Guwahati,
Guwahati 781 039,
Assam
Telephone: 0361-2690761
Fax: 0361-2690762
Web:
http://www.iitg.ernet.in/
Research Area: Bioinformatics, bioprocessing
Degrees Awarded: M
.Sc., B.Tech., M.Tech., Ph.D.

Indian Institute of Technology Kanpur
GT Road,
Kalyanpur,
Kanpur 208 016,
Uttar Pradesh
Telephone: 0512-2590481
Fax: 0512-2590260
Web:
http://www.iitk.ac.in/
Research Area: Biological sciences & bioengineering
Degrees Awarded: M.Sc., B.Tech., M.Tech., Ph.D.

Indian Institute of Technology Kharagpur
Kharagpur 721 302,
West Bengal
Telephone: 03222-255221
Fax: 03222-255303
Web:
http://www.iitkgp.ernet.in/
Research Area: agricultural & food technology, biotechnology
Degrees Awarded: M.Sc., B.Tech., M.Tech., Ph.D.

Indian Institute of Technology Madras
Chennai 600 036,
Tamil Nadu
Telephone: 044-22578058
Fax: 044-22570509
Research Area: Bioinformatics & computational biology, structure and functional dynamics of biomolecules, drug modelling.
Web:
http://www.iitm.ac.in/
Degrees Awarded: M.S, B.Tech., M.Tech., Ph.D.

Indian Institute of Technology Roorkee
Roorkee 247 667,
Uttaranchal
Telephone: 01332-272349, 274860
Fax: 01332-273560
Web:
http://www.iitr.ernet.in/
Degrees Awarded: M.Sc., B.Tech, , Ph.D.

Institute of Genomics and Integrative Biology (CSIR)
Near Jubilee Hall,
Delhi University Campus,
Mall Road,
Delhi 110 007
Telephone: 011-27666156-57/7602/7439
Fax: 011-27667471
Web:
http://www.igib.res.in/
Research Area: Allergy and infectious diseases, comparative genomics and gene expression, environmental biotechnology, design and synthesis of nucleic acid and peptides, genome informatics, genomics and molecular medicines, proteomics and structural biology.
Degrees Awarded: M.Sc., Ph.D.

Institute of Life Sciences (DBT)
Nalco Square,
Chandrasekharpur,
Bhubaneswar 751 023,
Orissa
Telephone: 0674-2300137/129, 2301460/476/900
Fax: 0674-2300728
Web:
http://www.ilsc.org/
Research Area: Cancer, malaria, age diseases, stress biology, ecophysiology, filariasis, cholera, plant-microbe molecular interaction and bio-degradation.
Degrees Awarded: Ph.D.

Institute of Microbial Technology (CSIR)
Sector 39-A,
Chandigarh 160 036
Telephone: 0172-695225/226/219, 690025/173/908
Fax: 0172-690585/ 632
Web:
http://www.imtech.res.in/
Research Area: Fermentation technology & applied microbiology, cell biology & immunology, molecular biology & microbial genetics, protein science & engineering.
Degrees Awarded: Ph.D.

International Centre for Genetic Engineering and Biotechnology
ICGEB Campus,
Aruna Asaf Ali Marg,
New Delhi 110 067
Telephone: 011-26195007
Fax: 011-26162316
Web:
http://www.icgeb.trieste.it/
Research Area: Mammalian biology: Virology immunology, malaria, recombinant gene products; Plant biology: Plant molecular biology, plant transformation, insect resistance, plant resistance.
Degrees Awarded: Ph.D.


Jawaharlal Nehru Centre for Advanced Scientific Research (DST)
Jakkur,
Bangalore 560 064,
Karnataka
Telephone: 080-23622750-57
Fax: 080-23622766
Web:
http://www.jncasr.ac.in/
Research Area: Chemistry & physics of materials, engineering mechanics, evolutionary & organismal biology, molecular biology & genetics, theoretical sciences, chemical biology, condensed matter theory, education technology, geodynamics.
Degrees Awarded: Deemed University, M.S. (Engineering), Ph.D., Integrated Ph.D.


National Botanical Research Institute (CSIR)
Rana Pratap Marg,
Lucknow 226 001,
Uttar Pradesh
Telephone: 0522-2205848
Fax: 0522-2205839
Web:
http://www.nbri-lko.org/
Research Area: Plant biodiversity & conservation biology, biomass biology & environmental sciences, genetics, plant breeding & agrotechnology, bioinformatics & library, molecular biology & genetic engineering, pharmacognosy & ethnopharmacology, phytochemistry, botanic garden & floriculture, plant conservation & eco education, biotechnology & plants physiology.
Degrees Awarded: Ph.D.

National Brain Research Centre (DBT)
Near NSG Campus,
Nainwal Mode, Manesar,
Gurgaon 122 050,
Haryana Telephone: 0124-2338922-26 Fax: 0124-2338910/28
Web:
http://www.nbrc.ac.in/
Research Area: Molecular and cellular neuroscience, systems neuroscience, theoretical neuroscience.
Degrees Awarded: M.Sc., Ph.D., A Deemed University

National Centre for Biological Sciences
G.K.V.K. Campus,
Bangalore 560 065,
India
Tel: ++ 91-80-23666001/02,23666018/19
Fax: ++ 91-80-23636662
Research Area: Cell biology, cancer biology, Biophysics, Neurobiology, Cell signalling, Biochemistry
Web:
http://www.ncbs.res.in/
Degrees Awarded: M.Sc., Integerated Ph.D, Ph.D


National Centre for Cell Sciences (DBT)
NCCS Complex,
University of Pune Campus,
Ganeshkhind,
Pune 411 007,
Maharashtra
Telephone: 020-25690922/41/51, 25692256-57
Fax: 020-25692259
Web:
http://www.nccs.res.in/
Research Area: Cell biology, cancer biology, infectious diseases, immunology, molecular biology, proteomics, genomics, diabetes and tissue engineering.
Degrees Awarded: M.Sc., Ph.D.


National Centre for Plant Genome Research (DBT)
Post Box 10531, JNU Campus, New Delhi 100 067
Telephone: (Director): 011-26187224
Fax: (Director): 011-26198234/26167394
Web:
http://ncpgr.nic.in/
Research Area: Nutritional, structural and functional genomics of various plant systems. Degrees Awarded: Ph.D.

National Chemical Laboratory (CSIR)
Dr. Homi Bhabha Road,
Pune 411 008,
Maharashtra
Telephone: 020-25893300
Fax: 020-25893355
Web:
http://www.ncl-india.org/
Research Area: Biochemical sciences, bioorganic & biomimetic chemistry, chemical engineering science, complex fluids & polymer engineering, heterogeneous catalysis, homogeneous catalysis, industrial flow modelling, materials chemistry, nanomaterials science & technology, organic chemistry, plant tissue culture, polymer chemistry & materials, polymer & materials modelling, process design & development, theory & computational sciences.
Degrees Awarded: Ph.D.


National Environmental Engineering Research Institute (CSIR)
Nehru Marg,
Nagpur 440 020,
Maharashtra
Telephone: 0712-2249885-890/ 2249969-972/975-981
Fax: 0712-2249900
Web:
http://www.neeri.nic.in/
Research Area: Air pollution control, environmental biotechnology & genomics, environmental system design, water technology, waste water management, land environment management, environmental impact & risk assessment, hazardous waste management, solid waste management, environmental policy analysis, instrumentation, environmental materials unit.
Degrees Awarded: Ph.D

National Institute of Immunology (DBT)
Aruna Asaf Ali Marg,
New Delhi 110 067
Telephone: 011-26717121-45
Fax: 011-26162125/26177626
Web:
http://www.nii.res.in/
Research Area: Gene regulation, immunity & infection, molecular design, reproduction & development.
Degrees Awarded: Ph.D.


Rajiv Gandhi Centre for Biotechnology
Thycaud PO,
Poojappura,
Thiruvananthapuram 695 014,
Kerala
Telephone: 0471-2341716/2347975
Fax: 0471-2348096
Web:
http://www.rgcb.res.in/
Research Area: Animal biotechnology, biophysical chemistry, cancer biology, environmental biotechnology, human molecular genetics, molecular endocrinology, molecular ethnopharmacology, molecular reproduction, mycobacterial research, neurobiology, plant molecular biology, protein chemistry, viral hepatitis.
Degrees Awarded: M.Tech,Ph.D

Regional Research Laboratory (CSIR)
Canal Road,
Jammu Tawi 180 001,
Jammu & Kashmir
Telephone: 0191-2546368, 2549051
Fax: 0191-2548607
Web:
http://www.rrljammu.org/
Research Area: Biotechnology, botany, pharmacology, natural product chemistry.
Degrees Awarded: Ph.D

Tata Institute of Fundamental Research
Homi Bhabha Road,
Mumbai 400 005,
IndiaTel: ++ 91-22-2278-2000
Fax: ++ 91-22-2280-4610, 2280-4611
Web:
http://www.tifr.res.in/
Research Area: Cell biology, cancer biology, Biophysics, Neurobiology, Cell signalling, Biochemistry
Degrees Awarded: M.Sc., Integerated Ph.D, Ph.D

2/26/08

GATE

The Graduate Aptitude Test in Engineering (GATE) is an all-India examination administered and conducted in eight zones across the country by the GATE Committee comprising faculty from Indian Institute of Science, Bangalore and seven Indian Institutes of Technology on behalf of the National Coordinating Board - GATE, Department of Education, Ministry of Human Resources Development (MHRD), Government of India.

The zones and the corresponding administrative institutes are
Zone 1 -
Indian Institute of Science Bangalore ---Organizing Institute For 2008
Zone 2 -
Indian Institute of Technology Bombay
Zone 3 -
Indian Institute of Technology Delhi
ELIGIBILTY PROGRAMS
Admission to post graduate programmes with MHRD and some other government scholarship/assistantship at engineering colleges/institutes in the country are open to those who qualify through GATE. GATE qualified candidates with Bachelor degree in Engineering/ Technology/ Architecture/ Pharmacy or Master degree in any branch of Science/Mathematics/Statistics/Computer Applications are eligible for Master/Doctoral programmes in Engineering/ Technology/Architecture/Pharmacy as well as for Doctoral programmes in relevant branches of Science.
SCHOLARSHIPS
To avail the scholarship, the candidate must additionally secure admission to such a postgraduate programme, as per the prevailing procedure of the admitting institution. GATE qualification, however, is not required for candidates with Master degree in Engineering/ Technology/ Architecture/ Pharmacy who may be seeking scholarship/assistantship for relevant doctoral programmes.

OTHER OPPURTUNITIES THROUGH GATE
Some institutions specify GATE as the mandatory qualification even for admission of self-financing students to postgraduate programmes. GATE qualified candidates in Engineering disciplines are also eligible for the award of Junior Research Fellowship in CSIR Laboratories. Some government organizations prescribe GATE qualification as a requirement for applying to the post of a Scientist/Engineer.


2/25/08

Scientists construct building blocks for artificial life

Scientists have succeeded in stitching together an entire bacterial genome, creating in the lab the full set of instructions needed to make a living thing. The stage is now set for the creation of the first artificial organism — and it could be achieved within the year.

Published online 24 January 2008 Nature

GENE GUN

The Gene Gun or the Biolistic Particle Delivery System, originally designed for plant transformation, is a device for injecting cells with genetic information .The payload is an elemental particle of a heavy metal coated with plasmid DNA. This technique is often simply referred to as biolistics. Another instrument that uses biolistics technology is the PSD-1000/He particle delivery system.
This device is able to transform almost any type of cell, including plants, and is not limited to genetic material of the nucleus: it can also transform organelles, including plastids.


Design & History: The gene gun was originally a Crosman air pistol modified to fire dense tungsten particles. The design was first used on onions to deliver particles coated with a phosphorescent marker gene. Genetic transformation can then be proven when the onion tissue expresses the gene.

Later the design was refined by removing the "surge tank" and changing to nonexplosive propellants. DuPont added a plastic extrusion to the exterior to visually improve the machine for mass production to the scientific community. Biorad contracted with Dupont to manufacture and distribute the device. Improvements include the use of helium propellant and a multi-disk-collision delivery mechanism. Other heavy metals such as gold and silver are also used. Gold may be favored because it has better uniformity than tungsten and tungsten can be toxic to cells, but its use may be limited due to availability and cost.


The primary inventor of the gene gun is horticultural scientist John C. Sanford together with Edward Wolf, who was the Director of Cornell's Submicron Facility at the time but now at Nanofabrication facility. As an electrical engineer, Wolf is familiar with making and using small structures. He bought the Crosman air pistol and performed the first genegun experiments with it in his basement. Sanford would come to his house with the genetic material and then take the transformed cells back to his lab. Horticultural scientist Theodore Klein at Cornell University worked closely with John Sanford on experiments using and proving the genegun. They had support from co-inventor Nelson Allen of the Cornell Nanofabrication Facilities Machine shop who had an instrumental role in changing the genegun from the air pistol prototype to a working scientific device. The rights to commercial use of the gene gun were sold by Wolf, Sanford and Cornell University to DuPont in 1990.

MOLECULAR DOCKING


Docking is a method which predicts the preferred orientation of one molecule to a second when bound to each other to form a stable complex. Knowledge of the preferred orientation in turn may be used to predict the strength of association or binding affinity between two molecules using for example scoring functions
Applications: A binding interaction between a small molecule ligand and a enzyme protein may result in activation or inhibition of the enzyme. If the protein is a receptor, ligand binding may result in agonism or antagonism. Docking is most commonly used in the field of drug design - most drugs are small organic molecules, and docking may be applied to
Hit identification - docking combined with a scoring function can be used to quickly screen large databases of potential drugs in silico to identify molecules that are likely to bind to protein target of interest.
Lead optimization - docking can be used to predict in where and in which relative orientation a ligand binds to a protein (also referred to as the binding mode or pose). This information may in turn be used to design more potent and selective analogs
Docking Programs
1.AUTODOCK
2.DOCK
3.GOLD
4.ARGULAB
5.AMBER